PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012347-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 679aa    MW: 78042 Da    PI: 8.1069
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012347-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.91.2e-2162155190
                   FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 
                            +fY+e+Ak++GFs+r+++++ +    +  t+r fvC + g++ +++++++k +r+r+++r+gC+a ++++k++     +w+vt + ++
  SMil_00012347-RA_Salv  62 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPTKNSNDNKPQRNRKSSRCGCQAYMRISKSTelgVPEWRVTGFANH 149
                            6**************9998877356667999*************99999**********************99777789********* PP

                   FAR1  85 HnHela 90 
                            HnHel 
  SMil_00012347-RA_Salv 150 HNHELL 155
                            ****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-1862155IPR004330FAR1 DNA binding domain
PfamPF105511.1E-19278367IPR018289MULE transposase domain
PROSITE profilePS509669.705556589IPR007527Zinc finger, SWIM-type
PfamPF044343.0E-7559587IPR007527Zinc finger, SWIM-type
SMARTSM005754.2E-6564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MSEEAGQMML VYEDPSDQRS ISLDDASSSE ESPDETRLSL ETTNDAIPYI GQRFVTHDAA  60
YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPTKNSND NKPQRNRKSS  120
RCGCQAYMRI SKSTELGVPE WRVTGFANHH NHELLEPNQV RFLPAYRTIS ESDKNRILMF  180
VKTGISVQQM MRLLELEKCI EPGYLPFTEK DVRNLLQSFR KVDPEDESID LLKMCRNIRD  240
KDPNFKFEFT LDSSGRLENI AWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGIWVGMN  300
NYGMPCFFGC VLLREENLRS FSWALKAFLG FMNGKAPQTI LTDQNMCLKE AIGMEMPTTK  360
HALCIWLTVA KFPSWFNAVL GERYNEWKAE FYRLYNLETI EDFELGWRDM VNSFGLHTNR  420
HIASLYALRN LWALPYLRSH FFAGLTTPGQ SKSINAFIQR FLSAQSRLAH FVEQVAVAVD  480
FKDQAGEQQT MQQNIQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVMAA HYASYQLEDG  540
FLVRHHTKLE GGRKVYWVPR EGIISCSCHQ FEFSGILCRH ALRVLSTGNC FQIPERYLPL  600
RWRRSMPLNR HLQAPRNDHA DRMQLLQSMV STLVTESAKS KERLDLATEH VSILLSRIRE  660
QPVSTMGMRE LSSSHRTLA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087634.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A067LDA90.0A0A067LDA9_JATCU; Uncharacterized protein
STRINGPOPTR_0004s23620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108962124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11